Publications written with support of CIISB

Recent publications

Blaha, J. et al. High-level expression andpurification of soluble form of human natural killer cell receptor NKR-P1 in HEK293S GnTI(-) cells. Protein Expression and Purification 140, 36-43, 

doi:10.1016/j.pep.2017.07.016 (2017).

Hlavacek, A. et al. Rapid single-step upconversion-linked immunosorbent assay for diclofenac. Microchimica Acta 184, 4159-4165,

doi:10.1007/s00604-017-2456-0 (2017).

Styskalik, A., Babiak, M., Machac, P., Relichova, B. & Pinkas, J. New Adamantane-like Silicophosphate Cage and Its Reactivity toward Tris(pentafluorophenyl)borane. Inorganic Chemistry 56, 10699-10705,

doi:10.1021/acs.inorgchem.7b01572 (2017).

All publications written with support of CIISB

2017

Bhat, S. S., Revankar, V. K., Khan, A., Pinjari, R. V. & Necas, M. Luminescent Ruthenium(II) Polypyridyl Complexes as Nonviral Carriers for DNA Delivery. Chemistry-an Asian Journal 12, 254-264, doi:10.1002/asia.201601515 (2017).

Blaha, J. et al. High-level expression and purification of soluble form of human natural killer cell receptor NKR-P1 in HEK293S GnTI(-) cells. Protein Expression and Purification 140, 36-43, doi:10.1016/j.pep.2017.07.016 (2017).

Bocanek, O., Sedo, O., Pekar, S. & Zdrahal, Z. Evaluation of sample preparation protocols for spider venom profiling by MALDI-TOF MS. Toxicon 133, 18-25, doi:10.1016/j.toxicon.2017.04.008 (2017).

Chalupa, D. et al. Enantioselective Synthesis of Cephalimysins B and C. Organic Letters 19, 750-753, doi:10.1021/acs.orglett.6b03373 (2017).

Chamradova, I. et al. The effect of hydroxyapatite particle size on viscoelastic properties and calcium release from a thermosensitive triblock copolymer. Colloid and Polymer Science 295, 107-115, doi:10.1007/s00396-016-3983-7 (2017).

Csavas, M. et al. Tri- and tetravalent mannoclusters cross-link and aggregate BC2L-A lectin from Burkholderia cenocepacia. Carbohydrate Research 437, 1-8, doi:10.1016/j.carres.2016.11.008 (2017).

Dostalova, S. et al. Apoferritin as an ubiquitous nanocarrier with excellent shelf life. International Journal of Nanomedicine 12, 2265-2278, doi:10.2147/ijn.s130267 (2017).

Fiala, T. et al. Bambusuril as a One-Electron Donor for Photoinduced Electron Transfer to Methyl Viologen in Mixed Crystals. Journal of the American Chemical Society 139, 2597-2603, doi:10.1021/jacs.6b08589 (2017).

Gajarsky, M. et al. Structure of a Stable G-Hairpin. Journal of the American Chemical Society 139, 3591-3594, doi:10.1021/jacs.6b10786 (2017).

Graf, M. et al. Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions. Nucleic Acids Research 45, 2887-2896, doi:10.1093/nar/gkw1272 (2017).

1Grochalova, M. et al. Deep coverage of the beer proteome. Journal of Proteomics 162, 119-124, doi:10.1016/j.jprot.2017.05.001 (2017).

Hamzehee, F., Pourayoubi, M., Necas, M. & Choquesillo-Lazarte, D. Extensive analysis of N-H center dot center dot center dot O hydrogen bonding in four classes of phosphorus compounds: a combined experimental and database study. Acta Crystallographica Section C-Structural Chemistry 73, 287-+, doi:10.1107/s2053229617001516 (2017).

Havel, V., Babiak, M. & Sindelar, V. Modulation of Bambusuril Anion Affinity in Water. Chemistry-a European Journal 23, 8963-8968, doi:10.1002/chem.201701316 (2017).

Hlavacek, A. et al. Rapid single-step upconversion-linked immunosorbent assay for diclofenac. Microchimica Acta 184, 4159-4165, doi:10.1007/s00604-017-2456-0 (2017).

Jancarikova, G. et al. Characterization of novel bangle lectin from Photorhabdus asymbiotica with dual sugar-binding specificity and its effect on host immunity. Plos Pathogens 13, 28, doi:10.1371/journal.ppat.1006564 (2017).

Jansen, S. et al. Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3 zeta-binding sites reveals key differences between MAP2c and its homolog Tau. Journal of Biological Chemistry 292, 6715-6727, doi:10.1074/jbc.M116.771097 (2017).

Jasnovidova, O., Krejcikova, M., Kubicek, K. & Stefl, R. Structural insight into recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by Rtt103p. Embo Reports 18, 906-913, doi:10.15252/embr.201643723 (2017).

Jelinkova, K. et al. Cubane Arrives on the Cucurbituril Scene. Organic Letters 19, 2698-2701, doi:10.1021/acs.orglett.7b01029 (2017).

Kacirova, M., Novacek, J., Man, P., Obsilova, V. & Obsil, T. Structural Basis for the 14-3-3 Protein-Dependent Inhibition of Phosducin Function. Biophysical Journal 112, 1339-1349, doi:10.1016/j.bpj.2017.02.036 (2017).

Kalynych, S., Fuzik, T., Pridal, A., de Miranda, J. & Plevka, P. Cryo-EM study of slow bee paralysis virus at low pH reveals iflavirus genome release mechanism. Proceedings of the National Academy of Sciences of the United States of America 114, 598-603, doi:10.1073/pnas.1616562114 (2017).

Kovalenko, A. et al. Adamantane substitutions: a path to high-performing, soluble, versatile and sustainable organic semiconducting materials. Journal of Materials Chemistry C 5, 4716-4723, doi:10.1039/c6tc05076j (2017).

Lousa, P., Nedozralova, H., Zupa, E., Novacek, J. & Hritz, J. Phosphorylation of the regulatory domain of human tyrosine hydroxylase 1 monitored using non-uniformly sampled NMR. Biophysical Chemistry 223, 25-29, doi:10.1016/j.bpc.2017.01.003 (2017).

Maier, L. et al. Diastereoselective Flexible Synthesis of Carbocyclic C-Nucleosides. Journal of Organic Chemistry 82, 3382-3402, doi:10.1021/acs.joc.6b02594 (2017).

Malatinsky, T. et al. Reversal of Stereoselectivity in Cycloadditions of Five-Membered Cyclic Nitrones Derived from Hexoses. European Journal of Organic Chemistry, 1086-1098, doi:10.1002/ejoc.201601488 (2017).

Mullapudi, E., Fuzik, T., Pridal, A. & Plevka, P. Cryo-electron Microscopy Study of the Genome Release of the Dicistrovirus Israeli Acute Bee Paralysis Virus. Journal of Virology 91, 12, doi:10.1128/jvi.02060-16 (2017).

Nejdl, L. et al. Platinum nanoparticles induce damage to DNA and inhibit DNA replication. Plos One 12, 19, doi:10.1371/journal.pone.0180798 (2017).

Nemec, A., Radolfova-Krizova, L., Maixnerova, M. & Sedo, O. Acinetobacter colistiniresistens sp nov (formerly genomic species 13 sensu Bouvet and Jeanjean and genomic species 14 sensu Tjernberg and Ursing), isolated from human infections and characterized by intrinsic resistance to polymyxins. International Journal of Systematic and Evolutionary Microbiology 67, 2134-2141, doi:10.1099/ijsem.0.001903 (2017).

Otevrel, J. & Bobal, P. Diamine-Tethered Bis(thiourea) Organocatalyst for Asymmetric Henry Reaction. Journal of Organic Chemistry 82, 8342-8358, doi:10.1021/acs.joc.7b00079 (2017).

Prochazkova, I. et al. Targeted proteomics driven verification of biomarker candidates associated with breast cancer aggressiveness. Biochimica Et Biophysica Acta-Proteins and Proteomics 1865, 488-498, doi:10.1016/j.bbapap.2017.02.012 (2017).

Rivera-Calzada, A. et al. The Structure of the R2TP Complex Defines a Platform for Recruiting Diverse Client Proteins to the HSP90 Molecular Chaperone System. Structure 25, 1145-+, doi:10.1016/j.str.2017.05.016 (2017).

Spurny, R. et al. Virion Structure of Black Queen Cell Virus, a Common Honeybee Pathogen. Journal of Virology 91, 14, doi:10.1128/jvi.02100-16 (2017).

Styskalik, A., Babiak, M., Machac, P., Relichova, B. & Pinkas, J. New Adamantane-like Silicophosphate Cage and Its Reactivity toward Tris(pentafluorophenyl)borane. Inorganic Chemistry 56, 10699-10705, doi:10.1021/acs.inorgchem.7b01572 (2017).

Uhlikova, H. et al. MAMP (microbe-associated molecular pattern)-induced changes in plasma membrane-associated proteins. Journal of Plant Physiology 210, 51-57, doi:10.1016/j.jplph.2016.12.005 (2017).

Weimann, I., Feller, J. & Zak, Z. Phase Equilibria in the System CuO-NiO-P4O10 and Synthesis, Crystal Structure, and Characterization of the New Copper Nickel Oxide Phosphate Cu3NiO(PO4)(2). Zeitschrift Fur Anorganische Und Allgemeine Chemie 643, 299-305, doi:10.1002/zaac.201600403 (2017).

Zachrdla, M. et al. Solution structure of domain 1.1 of the sigma(A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core. Journal of Biological Chemistry 292, 11610-11617, doi:10.1074/jbc.M117.784074 (2017).

Zeman, M. et al. Staphylococcus sciuri bacteriophages double-convert for staphylokinase and phospholipase, mediate interspecies plasmid transduction, and package mecA gene. Scientific Reports 7, 11, doi:10.1038/srep46319 (2017).

 

2016

Costanzo, G. et al. Non-Enzymatic Oligomerization of 3 ', 5 ' Cyclic AMP. Plos One 11, 14, doi:10.1371/journal.pone.0165723 (2016).

Hafidh, S. et al. Quantitative proteomics of the tobacco pollen tube secretome identifies novel pollen tube guidance proteins important for fertilization. Genome Biology 17, 29, doi:10.1186/s13059-016-0928-x (2016).

Kucera, J. et al. Comparative proteomic analysis of sulfur-oxidizing Acidithiobacillus ferrooxidans CCM 4253 cultures having lost the ability to couple anaerobic elemental sulfur oxidation with ferric iron reduction. Research in Microbiology 167, 587-594, doi:10.1016/j.resmic.2016.06.009 (2016).

Kylarova, S. et al. Cysteine residues mediate high-affinity binding of thioredoxin to ASK1. Febs Journal 283, 3821-3838, doi:10.1111/febs.13893 (2016).

Lattova, E., Bryant, J., Skrickova, J., Zdrahal, Z. & Popovic, M. Efficient Procedure for N-Glycan Analyses and Detection of Endo H-Like Activity in Human Tumor Specimens. Journal of Proteome Research 15, 2777-2786, doi:10.1021/acs.jproteome.6b00346 (2016).

Lizal, T., Ustrnul, L., Necas, M. & Sindelar, V. Propanediurea-Based Molecular Clips Bind Halide Anions: An Insight into the Mechanism of Cucurbituril Formation. Journal of Organic Chemistry 81, 8906-8910, doi:10.1021/acs.joc.6b01602 (2016).

Novacek, J. et al. Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate. Proceedings of the National Academy of Sciences of the United States of America 113, 9351-9356, doi:10.1073/pnas.1605883113 (2016).

Pavelek, L., Ladanyi, V., Necas, M., Moravec, Z. & Wichterle, K. Synthesis and characterization of lanthanide complexes with a pentadentate triazine-based ligand. Polyhedron 119, 134-141, doi:10.1016/j.poly.2016.08.035 (2016).

Phulwale, B. V., Mishra, S. K., Necas, M. & Mazal, C. Phenanthrylene-butadiynylene and Phenanthrylene-thienylene Macrocycles: Synthesis, Structure, and Properties. Journal of Organic Chemistry 81, 6244-6252, doi:10.1021/acs.joc.6b00814 (2016).

Sedo, O. et al. Rapid assignment of malting barley varieties by matrix-assisted laser desorption-ionisation - Time-of-flight mass spectrometry. Food Chemistry 206, 124-130, doi:10.1016/j.foodchem.2016.03.056 (2016).

Stranava, M. et al. Structural characterization of the heme-based oxygen sensor, AfGcHK, its interactions with the cognate response regulator, and their combined mechanism of action in a bacterial two-component signaling system. Proteins-Structure Function and Bioinformatics 84, 1375-1389, doi:10.1002/prot.25083 (2016).

Ustrnul, L., Babiak, M., Kulhanek, P. & Sindelar, V. A Cucurbituril Derivative That Exhibits Cation-Modulated Self Assembly. Journal of Organic Chemistry 81, 6075-6080, doi:10.1021/acs.joc.6b01288 (2016).

Yadav, D. K. & Lukaysky, P. J. NMR solution structure determination of large RNA-protein complexes. Progress in Nuclear Magnetic Resonance Spectroscopy 97, 57-81, doi:10.1016/j.pnmrs.2016.10.001 (2016).

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